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RNU6-413P RNA, U6 small nuclear 413, pseudogene [ Homo sapiens (human) ]

Gene ID: 106479748, updated on 17-Sep-2024

Summary

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Official Symbol
RNU6-413Pprovided by HGNC
Official Full Name
RNA, U6 small nuclear 413, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:47376
See related
Ensembl:ENSG00000206842 AllianceGenome:HGNC:47376
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See RNU6-413P in Genome Data Viewer
Location:
10p12.2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (22787393..22787499)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (22806396..22806502)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (23076322..23076428)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902393 Neighboring gene phosphatidylinositol-5-phosphate 4-kinase type 2 alpha Neighboring gene tRNA-Pro (GGG) 1-1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3135 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3136 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3137 Neighboring gene NANOG hESC enhancer GRCh37_chr10:22899474-22900008 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:22904391-22904959 Neighboring gene Sharpr-MPRA regulatory region 2326 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:22912555-22913055 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3141 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3142 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3143 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3144 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3145 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:22979554-22980468 Neighboring gene VISTA enhancer hs2048 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3146 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3147 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2212 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2213 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2214 Neighboring gene hESC enhancers GRCh37_chr10:23003153-23003761 and GRCh37_chr10:23003762-23004369 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3148 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:23099405-23099995 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:23099996-23100585 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:23113377-23114576 Neighboring gene uncharacterized LOC105376451 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:23164275-23164885 Neighboring gene armadillo repeat containing 3 Neighboring gene uncharacterized LOC107984215 Neighboring gene RNA, 5S ribosomal pseudogene 304

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_043948.1 

    Range
    101..207
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    22787393..22787499
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    22806396..22806502
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases