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RN7SL47P RNA, 7SL, cytoplasmic 47, pseudogene [ Homo sapiens (human) ]

Gene ID: 106479242, updated on 17-Sep-2024

Summary

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Official Symbol
RN7SL47Pprovided by HGNC
Official Full Name
RNA, 7SL, cytoplasmic 47, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:46063
See related
Ensembl:ENSG00000244710 AllianceGenome:HGNC:46063
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See RN7SL47P in Genome Data Viewer
Location:
6q21
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (106283413..106283711, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (107459583..107459881, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (106731288..106731586, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene RN7SK pseudogene 211 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17429 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:106441121-106441655 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:106442725-106443257 Neighboring gene NANOG hESC enhancer GRCh37_chr6:106462748-106463464 Neighboring gene PR/SET domain 1 Neighboring gene NANOG hESC enhancer GRCh37_chr6:106511809-106512319 Neighboring gene NANOG hESC enhancer GRCh37_chr6:106528405-106528951 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24877 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr6:106533839-106534558 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:106546043-106547242 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:106552649-106553363 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:106553364-106554077 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:106582537-106583736 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24878 Neighboring gene Sharpr-MPRA regulatory region 9287 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:106611080-106611926 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:106611927-106612773 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:106614661-106615396 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24883 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17430 Neighboring gene MPRA-validated peak6001 silencer Neighboring gene autophagy related 5 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:106770796-106771296 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:106771297-106771797 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24884 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24885 Neighboring gene RNA, U6 small nuclear 344, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17431 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:106808598-106809464 Neighboring gene crystallin beta-gamma domain containing 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:106895745-106896246 Neighboring gene RNA, 5S ribosomal pseudogene 211

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_045672.1 

    Range
    101..399
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    106283413..106283711 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    107459583..107459881 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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