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RN7SKP288 RN7SK pseudogene 288 [ Homo sapiens (human) ]

Gene ID: 106479223, updated on 17-Sep-2024

Summary

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Official Symbol
RN7SKP288provided by HGNC
Official Full Name
RN7SK pseudogene 288provided by HGNC
Primary source
HGNC:HGNC:46012
See related
Ensembl:ENSG00000252036 AllianceGenome:HGNC:46012
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See RN7SKP288 in Genome Data Viewer
Location:
10q25.2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (110756456..110756723)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (111640215..111640482)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (112516214..112516481)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene structural maintenance of chromosomes 3 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr10:112371015-112371952 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4039 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4040 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:112396871-112397422 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:112400903-112401440 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:112403057-112403601 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2821 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:112410991-112411492 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:112411493-112411992 Neighboring gene Sharpr-MPRA regulatory region 1411 Neighboring gene RNA binding motif protein 20 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4041 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:112444328-112444859 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:112458065-112458564 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:112461376-112461982 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:112468962-112469513 Neighboring gene uncharacterized LOC124902498 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:112523918-112524418 Neighboring gene RNA, 5S ribosomal pseudogene 327 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:112534241-112535440 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:112571707-112572272 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4043 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:112589780-112589960 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4047 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4046 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4045 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4044 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4048 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4049 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4050 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:112605645-112606144 Neighboring gene uncharacterized LOC124902499 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4051 Neighboring gene CRISPRi-validated cis-regulatory element chr10.4148 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4053

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Homology

Other Names

  • RNA, 7SK small nuclear pseudogene 288

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_045608.1 

    Range
    101..368
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    110756456..110756723
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    111640215..111640482
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases