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LOC106478647 transmembrane and TPR repeat-containing protein CG4050-like [ Limulus polyphemus (Atlantic horseshoe crab) ]

Gene ID: 106478647, updated on 21-Dec-2023

Summary

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Gene symbol
LOC106478647
Gene description
transmembrane and TPR repeat-containing protein CG4050-like
See related
EnsemblRapid:LOC106478647
Gene type
protein coding
RefSeq status
MODEL
Organism
Limulus polyphemus
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Merostomata; Xiphosura; Limulidae; Limulus
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Genomic context

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See LOC106478647 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
101 current Limulus_polyphemus-2.1.2 (GCF_000517525.1) Unplaced Scaffold NW_013665847.1 (394185..503720, complement)

NW_013665847.1Genomic Context describing neighboring genes Neighboring gene proline-rich protein 5-like Neighboring gene macrophage mannose receptor 1-like Neighboring gene achaete-scute homolog 1b-like Neighboring gene uncharacterized LOC111085104 Neighboring gene glutamate receptor ionotropic, delta-2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013665847 Unplaced Scaffold Reference Limulus_polyphemus-2.1.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein CG4050-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Limulus polyphemus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Limulus_polyphemus-2.1.2 Primary Assembly

Genomic

  1. NW_013665847.1 Reference Limulus_polyphemus-2.1.2 Primary Assembly

    Range
    394185..503720 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013939203.2 → XP_013794657.1  transmembrane and TPR repeat-containing protein CG4050-like isoform X2

    Related
    XP_013794657.1, XM_013939203.2
    Conserved Domains (3) summary
    sd00006
    Location:531 → 558
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:260 → 332
    DUF1736; Domain of unknown function (DUF1736)
    cl26002
    Location:440 → 838
    TPR_11; TPR repeat

  2. XM_022382279.1 → XP_022237987.1  transmembrane and TPR repeat-containing protein CG4050-like isoform X1

    Related
    XP_022237987.1, XM_022382279.1
    Conserved Domains (3) summary
    sd00006
    Location:548 → 575
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:277 → 349
    DUF1736; Domain of unknown function (DUF1736)
    cl26002
    Location:457 → 855
    TPR_11; TPR repeat

  3. XM_022382280.1 → XP_022237988.1  transmembrane and TPR repeat-containing protein CG4050-like isoform X2

    Related
    XP_022237988.1, XM_022382280.1
    Conserved Domains (3) summary
    sd00006
    Location:531 → 558
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:260 → 332
    DUF1736; Domain of unknown function (DUF1736)
    cl26002
    Location:440 → 838
    TPR_11; TPR repeat

  4. XM_022382281.1 → XP_022237989.1  transmembrane and TPR repeat-containing protein CG4050-like isoform X2

    Related
    XP_022237989.1, XM_022382281.1
    Conserved Domains (3) summary
    sd00006
    Location:531 → 558
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:260 → 332
    DUF1736; Domain of unknown function (DUF1736)
    cl26002
    Location:440 → 838
    TPR_11; TPR repeat
Nucleotide Protein
Heading Accession and Version

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