U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC106465444 nuclear transcription factor Y subunit alpha-like [ Limulus polyphemus (Atlantic horseshoe crab) ]

Gene ID: 106465444, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC106465444
Gene description
nuclear transcription factor Y subunit alpha-like
See related
EnsemblRapid:LOC106465444
Gene type
protein coding
RefSeq status
MODEL
Organism
Limulus polyphemus
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Merostomata; Xiphosura; Limulidae; Limulus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC106465444 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Limulus_polyphemus-2.1.2 (GCF_000517525.1) Unplaced Scaffold NW_013667554.1 (112000..143754, complement)

NW_013667554.1Genomic Context describing neighboring genes Neighboring gene perlwapin-like Neighboring gene nitrilase homolog 1-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_013667554 Unplaced Scaffold Reference Limulus_polyphemus-2.1.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCAAT-binding factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
nuclear transcription factor Y subunit alpha-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Limulus polyphemus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Limulus_polyphemus-2.1.2 Primary Assembly

Genomic

  1. NW_013667554.1 Reference Limulus_polyphemus-2.1.2 Primary Assembly

    Range
    112000..143754 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022393348.1 → XP_022249056.1  nuclear transcription factor Y subunit alpha-like isoform X2

    Related
    XP_022249056.1, XM_022393348.1
    Conserved Domains (1) summary
    pfam02045
    Location:222 → 277
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  2. XM_022393347.1 → XP_022249055.1  nuclear transcription factor Y subunit alpha-like isoform X1

    Related
    XP_022249055.1, XM_022393347.1
    Conserved Domains (1) summary
    pfam02045
    Location:237 → 292
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases