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LOC106461030 transmembrane and TPR repeat-containing protein 2-like [ Limulus polyphemus (Atlantic horseshoe crab) ]

Gene ID: 106461030, updated on 21-Dec-2023

Summary

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Gene symbol
LOC106461030
Gene description
transmembrane and TPR repeat-containing protein 2-like
See related
EnsemblRapid:LOC106461030
Gene type
protein coding
RefSeq status
MODEL
Organism
Limulus polyphemus
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Merostomata; Xiphosura; Limulidae; Limulus
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Genomic context

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See LOC106461030 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
101 current Limulus_polyphemus-2.1.2 (GCF_000517525.1) Unplaced Scaffold NW_013666493.1 (51176..246118)

NW_013666493.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit Neighboring gene uncharacterized LOC106461029

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013666493 Unplaced Scaffold Reference Limulus_polyphemus-2.1.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Limulus polyphemus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Limulus_polyphemus-2.1.2 Primary Assembly

Genomic

  1. NW_013666493.1 Reference Limulus_polyphemus-2.1.2 Primary Assembly

    Range
    51176..246118
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013920809.2 → XP_013776263.2  transmembrane and TPR repeat-containing protein 2-like isoform X1

    Related
    XP_013776263.2, XM_013920809.2
    Conserved Domains (3) summary
    sd00006
    Location:606 → 634
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:283 → 356
    DUF1736; Domain of unknown function (DUF1736)
    cl26002
    Location:570 → 898
    TPR_11; TPR repeat

  2. XM_022387839.1 → XP_022243547.1  transmembrane and TPR repeat-containing protein 2-like isoform X2

    Related
    XP_022243547.1, XM_022387839.1
    Conserved Domains (3) summary
    COG0457
    Location:560 → 728
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:606 → 634
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:283 → 356
    DUF1736; Domain of unknown function (DUF1736)
Nucleotide Protein
Heading Accession and Version

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