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LOC106452965 callose synthase 9 [ Brassica napus (rape) ]

Gene ID: 106452965, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106452965
Gene description
callose synthase 9
Locus tag
HID58_019984
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106452965 in Genome Data Viewer
Location:
chromosome: A5
Exon count:
52
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) A5 NC_063438.1 (26685778..26699430)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) A5 NC_027761.2 (30333745..30347319)

Chromosome A5 - NC_063438.1Genomic Context describing neighboring genes Neighboring gene GPI transamidase component PIG-S-like Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene ankyrin repeat and SAM domain-containing protein 6-like Neighboring gene putative oxidoreductase TDA3 Neighboring gene uncharacterized LOC106452968 Neighboring gene GPI transamidase component PIG-T

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063438.1 Reference Da-Ae Primary Assembly

    Range
    26685778..26699430
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048780068.1 → XP_048636025.1  callose synthase 9

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases