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LOC106451318 probable beta-1,3-galactosyltransferase 3 [ Brassica napus (rape) ]

Gene ID: 106451318, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106451318
Gene description
probable beta-1,3-galactosyltransferase 3
Locus tag
HID58_017843
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106451318 in Genome Data Viewer
Location:
chromosome: A5
Exon count:
11
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) A5 NC_063438.1 (6709043..6712289)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) A5 NC_027761.2 (9445851..9448997)

Chromosome A5 - NC_063438.1Genomic Context describing neighboring genes Neighboring gene putative nuclease HARBI1 Neighboring gene glutathione S-transferase T3-like Neighboring gene ent-kaurenoic acid oxidase 2 Neighboring gene transcription factor MYB101 Neighboring gene uncharacterized LOC111215597

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,3-galactosyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063438.1 Reference Da-Ae Primary Assembly

    Range
    6709043..6712289
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013893234.3 → XP_013748688.1  probable beta-1,3-galactosyltransferase 3 isoform X1

    UniProtKB/TrEMBL
    A0A078IE42
    Conserved Domains (1) summary
    PLN03193
    Location:1 → 409
    PLN03193; beta-1,3-galactosyltransferase; Provisional

  2. XM_013893235.3 → XP_013748689.1  probable beta-1,3-galactosyltransferase 3 isoform X2

    UniProtKB/TrEMBL
    A0A078IE42
    Conserved Domains (3) summary
    PLN03193
    Location:1 → 406
    PLN03193; beta-1,3-galactosyltransferase; Provisional
    pfam01762
    Location:151 → 349
    Galactosyl_T; Galactosyltransferase
    pfam13334
    Location:17 → 111
    DUF4094; Domain of unknown function (DUF4094)
Nucleotide Protein
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