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LOC106440902 probable beta-1,3-galactosyltransferase 4 [ Brassica napus (rape) ]

Gene ID: 106440902, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106440902
Gene description
probable beta-1,3-galactosyltransferase 4
Locus tag
HID58_012749
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106440902 in Genome Data Viewer
Location:
chromosome: A3
Exon count:
11
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) A3 NC_063436.1 (27188321..27190843, complement)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) A3 NC_027759.2 (42053281..42055890, complement)

Chromosome A3 - NC_063436.1Genomic Context describing neighboring genes Neighboring gene GDP-L-galactose phosphorylase 1-like Neighboring gene uncharacterized LOC125590377 Neighboring gene uncharacterized LOC125590379 Neighboring gene uncharacterized BNAA03G48340D Neighboring gene uncharacterized LOC106440904

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,3-galactosyltransferase 4
Names
BnaA03g48330D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063436.1 Reference Da-Ae Primary Assembly

    Range
    27188321..27190843 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022716941.2 → XP_022572662.2  probable beta-1,3-galactosyltransferase 4 isoform X2

  2. XM_013882673.3 → XP_013738127.2  probable beta-1,3-galactosyltransferase 4 isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases