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LOC106438975 cellulose synthase A catalytic subunit 2 [UDP-forming] [ Brassica napus (rape) ]

Gene ID: 106438975, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106438975
Gene description
cellulose synthase A catalytic subunit 2 [UDP-forming]
Locus tag
HID58_039958
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106438975 in Genome Data Viewer
Location:
chromosome: C1
Exon count:
12
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) C1 NC_063444.1 (131821..137183)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) C1 NC_027767.2 (681884..687253)

Chromosome C1 - NC_063444.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106373742 Neighboring gene egg cell-secreted protein 1.4-like Neighboring gene transfer RNA histidin (anticodon GUG) Neighboring gene uncharacterized LOC106373756 Neighboring gene small nucleolar RNA SNORD14

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase A catalytic subunit 2 [UDP-forming]

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063444.1 Reference Da-Ae Primary Assembly

    Range
    131821..137183
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013880310.3 → XP_013735764.2  cellulose synthase A catalytic subunit 2 [UDP-forming]

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases