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LOC106438924 rhamnogalacturonan I rhamnosyltransferase 1 [ Brassica napus (rape) ]

Gene ID: 106438924, updated on 10-Oct-2024

Summary

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Gene symbol
LOC106438924
Gene description
rhamnogalacturonan I rhamnosyltransferase 1
Locus tag
HID58_053248
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106438924 in Genome Data Viewer
Location:
chromosome: C3
Exon count:
8
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) C3 NC_063446.1 (23136090..23139096, complement)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) A3 NC_027759.2 (21173324..21175450, complement)

Chromosome C3 - NC_063446.1Genomic Context describing neighboring genes Neighboring gene UDP-arabinopyranose mutase 1 Neighboring gene protein GOLVEN 9-like Neighboring gene NADPH-dependent diflavin oxidoreductase 1 Neighboring gene probable galacturonosyltransferase 9 Neighboring gene UPF0496 protein At3g57100-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rhamnogalacturonan I rhamnosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063446.1 Reference Da-Ae Primary Assembly

    Range
    23136090..23139096 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013880221.3 → XP_013735675.2  rhamnogalacturonan I rhamnosyltransferase 1

    UniProtKB/TrEMBL
    A0A816IF87
Nucleotide Protein
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Gene LinkOut

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