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LOC106435863 sulfoquinovosyl transferase SQD2 [ Brassica napus (rape) ]

Gene ID: 106435863, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106435863
Gene description
sulfoquinovosyl transferase SQD2
Locus tag
HID58_090022
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106435863 in Genome Data Viewer
Location:
chromosome: C9
Exon count:
12
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) C9 NC_063452.1 (64871207..64874443, complement)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) Unplaced Scaffold NW_019168902.1 (42092..45347, complement)

Chromosome C9 - NC_063452.1Genomic Context describing neighboring genes Neighboring gene protein OCTOPUS-like Neighboring gene protein NRT1/ PTR FAMILY 8.2 Neighboring gene josephin-like protein Neighboring gene putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase Neighboring gene auxin transporter-like protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sulfolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast envelope IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sulfoquinovosyl transferase SQD2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063452.1 Reference Da-Ae Primary Assembly

    Range
    64871207..64874443 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013876792.3 → XP_013732246.2  sulfoquinovosyl transferase SQD2

Nucleotide Protein
Heading Accession and Version

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