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LOC106435387 endochitinase CH25 [ Brassica napus (rape) ]

Gene ID: 106435387, updated on 10-Oct-2024

Summary

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Gene symbol
LOC106435387
Gene description
endochitinase CH25
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Also known as
Ch25
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Genomic context

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See LOC106435387 in Genome Data Viewer
Location:
chromosome: C5
Exon count:
2
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) C5 NC_063448.1 (51021441..51023186)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) C5 NC_027771.2 (38955129..38956867)

Chromosome C5 - NC_063448.1Genomic Context describing neighboring genes Neighboring gene telomere repeat-binding protein 3 Neighboring gene factor of DNA methylation 3 Neighboring gene uncharacterized LOC125587342 Neighboring gene uncharacterized LOC106433409 Neighboring gene cysteine proteinase inhibitor 6-like Neighboring gene protein ELC-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell wall macromolecule catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chitin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in defense response to fungus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
endochitinase CH25
XP_013731720.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001425590.1 → NP_001412519.1  endochitinase CH25 precursor

    Status: PROVISIONAL

    Source sequence(s)
    EG019231, ES269274, EV218260, EV219986, JAGKQM010000015
    UniProtKB/Swiss-Prot
    Q09023

RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063448.1 Reference Da-Ae Primary Assembly

    Range
    51021441..51023186
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013876266.3 → XP_013731720.1  endochitinase CH25

    Conserved Domains (2) summary
    cd06921
    Location:21 → 61
    ChtBD1_GH19_hevein; Hevein or Type 1 chitin binding domain subfamily co-occuring with family 19 glycosyl hydrolases or with barwin domains
    pfam00182
    Location:74 → 305
    Glyco_hydro_19; Chitinase class I
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q09023.1 GenPept UniProtKB/Swiss-Prot:Q09023

Gene LinkOut

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Molecular Biology Databases