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LOC106433854 glucomannan 4-beta-mannosyltransferase 9 [ Brassica napus (rape) ]

Gene ID: 106433854, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106433854
Gene description
glucomannan 4-beta-mannosyltransferase 9
Locus tag
HID58_089911
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106433854 in Genome Data Viewer
Location:
chromosome: C9
Exon count:
9
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) C9 NC_063452.1 (63976382..63981693)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) Unplaced Scaffold NW_019168703.1 (191814..201285)

Chromosome C9 - NC_063452.1Genomic Context describing neighboring genes Neighboring gene probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene histone deacetylase HDT3-like Neighboring gene transfer RNA leucine (anticodon UAA)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucomannan 4-beta-mannosyltransferase 9
Names
BnaCnng02590D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063452.1 Reference Da-Ae Primary Assembly

    Range
    63976382..63981693
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013874682.3 → XP_013730136.1  glucomannan 4-beta-mannosyltransferase 9

    UniProtKB/TrEMBL
    A0A078FE30, A0A816I429
    Conserved Domains (1) summary
    cd06437
    Location:97 → 333
    CESA_CaSu_A2; Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex
Nucleotide Protein
Heading Accession and Version

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