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LOC106419118 probable polygalacturonase At3g15720 [ Brassica napus (rape) ]

Gene ID: 106419118, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106419118
Gene description
probable polygalacturonase At3g15720
Locus tag
HID58_076131
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106419118 in Genome Data Viewer
Location:
chromosome: C7
Exon count:
10
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) C7 NC_063450.1 (32359908..32362681)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) C7 NC_027773.2 (27284835..27287450)

Chromosome C7 - NC_063450.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125589813 Neighboring gene uncharacterized LOC106391176 Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC106409061 Neighboring gene copper-transporting ATPase RAN1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable polygalacturonase At3g15720
Names
BnaC07g18180D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063450.1 Reference Da-Ae Primary Assembly

    Range
    32359908..32362681
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013859879.3 → XP_013715333.2  probable polygalacturonase At3g15720

Nucleotide Protein
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