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LOC106418960 tRNA (carboxymethyluridine(34)-5-O)-methyltransferase-like [ Brassica napus (rape) ]

Gene ID: 106418960, updated on 10-Oct-2024

Summary

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Gene symbol
LOC106418960
Gene description
tRNA (carboxymethyluridine(34)-5-O)-methyltransferase-like
Locus tag
HID58_028936
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106418960 in Genome Data Viewer
Location:
chromosome: A8
Exon count:
3
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) A8 NC_063441.1 (6909030..6910820, complement)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) A8 NC_027764.2 (9049029..9050821, complement)

Chromosome A8 - NC_063441.1Genomic Context describing neighboring genes Neighboring gene serine hydroxymethyltransferase 7-like Neighboring gene uncharacterized protein At4g37920 Neighboring gene small acidic protein 1 Neighboring gene acetyl-CoA carboxylase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables S-adenosylmethionine-dependent methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA wobble uridine modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA (carboxymethyluridine(34)-5-O)-methyltransferase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063441.1 Reference Da-Ae Primary Assembly

    Range
    6909030..6910820 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013859693.3 → XP_013715147.2  tRNA (carboxymethyluridine(34)-5-O)-methyltransferase-like

    UniProtKB/TrEMBL
    A0A078HYT5

  2. XM_022689841.2 → XP_022545562.2  tRNA (carboxymethyluridine(34)-5-O)-methyltransferase-like

    UniProtKB/TrEMBL
    A0A078HYT5

  3. XM_013859694.3 → XP_013715148.2  tRNA (carboxymethyluridine(34)-5-O)-methyltransferase-like

    UniProtKB/TrEMBL
    A0A078HYT5
Nucleotide Protein
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Molecular Biology Databases