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LOC106415724 cellulose synthase A catalytic subunit 8 [UDP-forming] [ Brassica napus (rape) ]

Gene ID: 106415724, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106415724
Gene description
cellulose synthase A catalytic subunit 8 [UDP-forming]
Locus tag
HID58_077901
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Also known as
CesA8.1; CesA8.2
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Genomic context

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See LOC106415724 in Genome Data Viewer
Location:
chromosome: C7
Exon count:
12
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) C7 NC_063450.1 (47879084..47883079, complement)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) C9 NC_027775.2 (29396901..29400901, complement)

Chromosome C7 - NC_063450.1Genomic Context describing neighboring genes Neighboring gene glutathione S-transferase T3-like Neighboring gene 60S ribosomal protein L11-2 Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene transcription factor MYB98 Neighboring gene metal transporter Nramp5-like Neighboring gene ras-related protein RABA1d

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase A catalytic subunit 8
Names
cellulose synthase 8.1 catalytic subunit
cellulose synthase 8.2 catalytic subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001315941.1 → NP_001302870.1  cellulose synthase A catalytic subunit 8

    Status: PROVISIONAL

    Source sequence(s)
    FJ529179
    UniProtKB/TrEMBL
    A0A816N674, D8L1X1
    Conserved Domains (3) summary
    PLN02195
    Location:1 → 984
    PLN02195; cellulose synthase A
    cl11394
    Location:430 → 732
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    cl17238
    Location:8 → 58
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063450.1 Reference Da-Ae Primary Assembly

    Range
    47879084..47883079 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases