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LOC106415338 GPI mannosyltransferase 2 [ Brassica napus (rape) ]

Gene ID: 106415338, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106415338
Gene description
GPI mannosyltransferase 2
Locus tag
HID58_083607
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106415338 in Genome Data Viewer
Location:
chromosome: C8
Exon count:
8
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) C8 NC_063451.1 (47146915..47149378)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) C8 NC_027774.2 (43398736..43401074)

Chromosome C8 - NC_063451.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106415340 Neighboring gene 25.3 kDa vesicle transport protein-like Neighboring gene serine--tRNA ligase, chloroplastic/mitochondrial Neighboring gene aminomethyltransferase, mitochondrial Neighboring gene acanthoscurrin-1-like Neighboring gene tyrosyl-DNA phosphodiesterase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,6-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glycolipid mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of mannosyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GPI mannosyltransferase 2
Names
BnaC08g41770D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063451.1 Reference Da-Ae Primary Assembly

    Range
    47146915..47149378
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048765347.1 → XP_048621304.1  GPI mannosyltransferase 2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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