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LOC106410100 callose synthase 3 [ Brassica napus (rape) ]

Gene ID: 106410100, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106410100
Gene description
callose synthase 3
Locus tag
HID58_045318
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106410100 in Genome Data Viewer
Location:
chromosome: C2
Exon count:
43
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) C2 NC_063445.1 (2443166..2454103, complement)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) C7 NC_027773.2 (55041757..55052765, complement)

Chromosome C2 - NC_063445.1Genomic Context describing neighboring genes Neighboring gene DNA damage-repair/toleration protein DRT100-like Neighboring gene uncharacterized BNAC02G04430D Neighboring gene CLAVATA3/ESR (CLE)-related protein 40 Neighboring gene pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 Neighboring gene protein EMSY-LIKE 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063445.1 Reference Da-Ae Primary Assembly

    Range
    2443166..2454103 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013850593.3 → XP_013706047.2  callose synthase 3

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases