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LOC106404152 UDP-arabinopyranose mutase 1 [ Brassica napus (rape) ]

Gene ID: 106404152, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106404152
Gene description
UDP-arabinopyranose mutase 1
Locus tag
HID58_003945
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106404152 in Genome Data Viewer
Location:
chromosome: A1
Exon count:
4
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) A1 NC_063434.1 (30940494..30942625, complement)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) A2 NC_027758.2 (32410667..32412772)

Chromosome A1 - NC_063434.1Genomic Context describing neighboring genes Neighboring gene NAC domain-containing protein 60-like Neighboring gene rhamnogalacturonan I rhamnosyltransferase 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-arabinopyranose mutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in UDP-L-arabinose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-arabinopyranose mutase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063434.1 Reference Da-Ae Primary Assembly

    Range
    30940494..30942625 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013844895.3 → XP_013700349.1  UDP-arabinopyranose mutase 1

    UniProtKB/TrEMBL
    A0A078I298
    Conserved Domains (1) summary
    PLN03180
    Location:15 → 355
    PLN03180; reversibly glycosylated polypeptide; Provisional
Nucleotide Protein
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