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LOC106396022 4-alpha-glucanotransferase DPE2 [ Brassica napus (rape) ]

Gene ID: 106396022, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106396022
Gene description
4-alpha-glucanotransferase DPE2
Locus tag
HID58_058081
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106396022 in Genome Data Viewer
Location:
chromosome: C4
Exon count:
22
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) C4 NC_063447.1 (1936072..1941507)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) C4 NC_027770.2 (2259368..2264748)

Chromosome C4 - NC_063447.1Genomic Context describing neighboring genes Neighboring gene stomatal closure-related actin-binding protein 2 Neighboring gene probable E3 ubiquitin-protein ligase RHC1A Neighboring gene cytochrome P450 98A3-like Neighboring gene WAT1-related protein At2g40900

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 4-alpha-glucanotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables starch binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
4-alpha-glucanotransferase DPE2
Names
BnaC04g01600D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063447.1 Reference Da-Ae Primary Assembly

    Range
    1936072..1941507
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013836319.3 → XP_013691773.1  4-alpha-glucanotransferase DPE2 isoform X2

    UniProtKB/TrEMBL
    A0A816T6M9
    Conserved Domains (4) summary
    cd05815
    Location:21 → 121
    CBM20_DPE2_repeat1; Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on ...
    cd05816
    Location:165 → 262
    CBM20_DPE2_repeat2; Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on ...
    PLN02950
    Location:12 → 918
    PLN02950; 4-alpha-glucanotransferase
    pfam02446
    Location:277 → 919
    Glyco_hydro_77; 4-alpha-glucanotransferase

  2. XM_013836318.3 → XP_013691772.1  4-alpha-glucanotransferase DPE2 isoform X1

    UniProtKB/TrEMBL
    A0A078GFG5, A0A816T6M9
    Conserved Domains (4) summary
    cd05815
    Location:21 → 121
    CBM20_DPE2_repeat1; Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on ...
    cd05816
    Location:165 → 262
    CBM20_DPE2_repeat2; Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on ...
    PLN02950
    Location:12 → 919
    PLN02950; 4-alpha-glucanotransferase
    pfam02446
    Location:277 → 920
    Glyco_hydro_77; 4-alpha-glucanotransferase
Nucleotide Protein
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