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LOC106395662 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 2 [ Brassica napus (rape) ]

Gene ID: 106395662, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106395662
Gene description
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106395662 in Genome Data Viewer
Location:
chromosome: C5
Exon count:
15
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) C5 NC_063448.1 (8826067..8832920)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) C4 NC_027770.2 (23450428..23454471, complement)

Chromosome C5 - NC_063448.1Genomic Context describing neighboring genes Neighboring gene precursor of CEP13 Neighboring gene ATP-dependent DNA helicase 2 subunit KU70-like Neighboring gene probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 3 Neighboring gene trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063448.1 Reference Da-Ae Primary Assembly

    Range
    8826067..8832920
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048757180.1 → XP_048613137.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases