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LOC106388994 polygalacturonase-like [ Brassica napus (rape) ]

Gene ID: 106388994, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106388994
Gene description
polygalacturonase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Also known as
Sta44G2
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Genomic context

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See LOC106388994 in Genome Data Viewer
Location:
chromosome: C3
Exon count:
4
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) C3 NC_063446.1 (24745263..24747152, complement)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) C3 NC_027769.2 (35981758..35983648, complement)

Chromosome C3 - NC_063446.1Genomic Context describing neighboring genes Neighboring gene thymidine kinase a Neighboring gene heterogeneous nuclear ribonucleoprotein 1 Neighboring gene polygalacturonase-like Neighboring gene exopolygalacturonase clone GBGA483-like Neighboring gene U11/U12 small nuclear ribonucleoprotein 25 kDa protein Neighboring gene small nucleolar RNA snoR130

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polygalacturonase-like
Names
polygalacturonase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063446.1 Reference Da-Ae Primary Assembly

    Range
    24745263..24747152 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013829177.2 → XP_013684631.2  polygalacturonase-like

    UniProtKB/TrEMBL
    A0A078G9V9, A0A816IEM4
    Conserved Domains (1) summary
    pfam00295
    Location:47 → 374
    Glyco_hydro_28; Glycosyl hydrolases family 28
Nucleotide Protein
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