U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC106383938 callose synthase 3 [ Brassica napus (rape) ]

Gene ID: 106383938, updated on 30-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC106383938
Gene description
callose synthase 3
Locus tag
HID58_004279
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC106383938 in Genome Data Viewer
Location:
chromosome: A2
Exon count:
43
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) A2 NC_063435.1 (1099452..1109675, complement)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) A2 NC_027758.2 (4267693..4281685, complement)

Chromosome A2 - NC_063435.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106383929 Neighboring gene CLAVATA3/ESR (CLE)-related protein 40-like Neighboring gene pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 Neighboring gene protein EMSY-LIKE 3-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
callose synthase 3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063435.1 Reference Da-Ae Primary Assembly

    Range
    1099452..1109675 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048747955.1 → XP_048603912.1  callose synthase 3

  2. XM_048747959.1 → XP_048603916.1  callose synthase 3

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases