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LOC106377222 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 [ Brassica napus (rape) ]

Gene ID: 106377222, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106377222
Gene description
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10
Locus tag
HID58_043059
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106377222 in Genome Data Viewer
Location:
chromosome: C1
Exon count:
5
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) C1 NC_063444.1 (32065915..32069848, complement)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) C1 NC_027767.2 (368418..372328)

Chromosome C1 - NC_063444.1Genomic Context describing neighboring genes Neighboring gene serpin-Z1-like Neighboring gene small nucleolar RNA R71 Neighboring gene putative potassium transporter 12 Neighboring gene protein ROOT INITIATION DEFECTIVE 3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063444.1 Reference Da-Ae Primary Assembly

    Range
    32065915..32069848 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013817421.3 → XP_013672875.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10

    UniProtKB/TrEMBL
    A0A078IUB5
    Conserved Domains (1) summary
    cl28137
    Location:1 → 836
    Glyco_transf_20; Glycosyltransferase family 20

  2. XM_013817419.3 → XP_013672873.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10

    UniProtKB/TrEMBL
    A0A078IUB5
    Conserved Domains (1) summary
    cl28137
    Location:1 → 836
    Glyco_transf_20; Glycosyltransferase family 20

  3. XM_013817418.3 → XP_013672872.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10

    UniProtKB/TrEMBL
    A0A078IUB5
    Conserved Domains (1) summary
    cl28137
    Location:1 → 836
    Glyco_transf_20; Glycosyltransferase family 20

  4. XM_022694379.2 → XP_022550100.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10

    UniProtKB/TrEMBL
    A0A078IUB5
    Conserved Domains (1) summary
    cl28137
    Location:1 → 836
    Glyco_transf_20; Glycosyltransferase family 20
Nucleotide Protein
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