U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC106356845 polygalacturonase ADPG1 [ Brassica napus (rape) ]

Gene ID: 106356845, updated on 30-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC106356845
Gene description
polygalacturonase ADPG1
Locus tag
HID58_026535
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Also known as
pga
Annotation information
Annotation category: partial on reference assembly
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC106356845 in Genome Data Viewer
Location:
chromosome: A7
Exon count:
9
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) A7 NC_063440.1 (17579642..17582243, complement)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) A3 NC_027759.2 (24044887..24047580)

Chromosome A7 - NC_063440.1Genomic Context describing neighboring genes Neighboring gene zinc finger AN1 and C2H2 domain-containing stress-associated protein 13 Neighboring gene uncharacterized LOC106356846 Neighboring gene calcium-dependent protein kinase 32-like Neighboring gene guanylate kinase 2-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anther dehiscence IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fruit dehiscence IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pectin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
polygalacturonase ADPG1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001315946.1 → NP_001302875.1  polygalacturonase ADPG1 precursor

    Status: PROVISIONAL

    Source sequence(s)
    Z49971
    UniProtKB/TrEMBL
    A0A078BXJ6, A0A816YUG9, Q42636
    Conserved Domains (1) summary
    PLN02218
    Location:1 → 432
    PLN02218; polygalacturonase ADPG

RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063440.1 Reference Da-Ae Primary Assembly

    Range
    17579642..17582243 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.