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LOC106354351 probable xyloglucan 6-xylosyltransferase 5 [ Brassica napus (rape) ]

Gene ID: 106354351, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106354351
Gene description
probable xyloglucan 6-xylosyltransferase 5
Locus tag
HID58_073232
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106354351 in Genome Data Viewer
Location:
chromosome: C6
Exon count:
1
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) C6 NC_063449.1 (45072762..45074695)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) C6 NC_027772.2 (42240600..42242480)

Chromosome C6 - NC_063449.1Genomic Context describing neighboring genes Neighboring gene dolichol-phosphate mannose synthase subunit 2 Neighboring gene nuclear intron maturase 4, mitochondrial Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g74360 Neighboring gene uncharacterized LOC125589132 Neighboring gene protein NEN3-like Neighboring gene NEP1-interacting protein-like 2 Neighboring gene dolichol-phosphate mannose synthase subunit 2-like Neighboring gene nuclear intron maturase 4, mitochondrial-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xyloglucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable xyloglucan 6-xylosyltransferase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063449.1 Reference Da-Ae Primary Assembly

    Range
    45072762..45074695
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048761425.1 → XP_048617382.1  probable xyloglucan 6-xylosyltransferase 5

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases