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LOC106346964 arabinosyltransferase RRA3 [ Brassica napus (rape) ]

Gene ID: 106346964, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106346964
Gene description
arabinosyltransferase RRA3
Locus tag
HID58_021925
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106346964 in Genome Data Viewer
Location:
chromosome: A6
Exon count:
2
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) A6 NC_063439.1 (7991453..7993366, complement)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) A6 NC_027762.2 (11137239..11139153, complement)

Chromosome A6 - NC_063439.1Genomic Context describing neighboring genes Neighboring gene methyltransferase-like protein 2 Neighboring gene protein BRASSINAZOLE-RESISTANT 2 Neighboring gene uncharacterized membrane protein At1g75140 Neighboring gene uncharacterized LOC125610259 Neighboring gene putative wall-associated receptor kinase-like 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in root hair cell development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
arabinosyltransferase RRA3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063439.1 Reference Da-Ae Primary Assembly

    Range
    7991453..7993366 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013786440.3 → XP_013641894.1  arabinosyltransferase RRA3

    UniProtKB/TrEMBL
    A0A078INF7, A0A816S6H2
    Conserved Domains (1) summary
    pfam03407
    Location:176 → 400
    Nucleotid_trans; Nucleotide-diphospho-sugar transferase
Nucleotide Protein
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