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LOC106345849 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 [ Brassica napus (rape) ]

Gene ID: 106345849, updated on 10-Oct-2024

Summary

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Gene symbol
LOC106345849
Gene description
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1
Locus tag
HID58_047715
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica napus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106345849 in Genome Data Viewer
Location:
chromosome: C2
Exon count:
18
Annotation release Status Assembly Chr Location
102 current Da-Ae (GCF_020379485.1) C2 NC_063445.1 (28478555..28488251, complement)
101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) Unplaced Scaffold NW_019168575.1 (418229..427833)

Chromosome C2 - NC_063445.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC111210390 Neighboring gene uncharacterized LOC106345846 Neighboring gene uncharacterized LOC125581631

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Da-Ae Primary Assembly

Genomic

  1. NC_063445.1 Reference Da-Ae Primary Assembly

    Range
    28478555..28488251 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022710731.2 → XP_022566452.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1

    UniProtKB/TrEMBL
    A0A078FNE0
    Conserved Domains (1) summary
    PLN03064
    Location:1 → 942
    PLN03064; alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

  2. XM_048747410.1 → XP_048603367.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases