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LOC106344420 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 3 [ Brassica oleracea (wild cabbage) ]

Gene ID: 106344420, updated on 30-Oct-2024

Summary

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Gene symbol
LOC106344420
Gene description
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106344420 in Genome Data Viewer
Location:
chromosome: C5
Exon count:
17
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C5 NC_027752.1 (8163394..8167357)

Chromosome C5 - NC_027752.1Genomic Context describing neighboring genes Neighboring gene ATP-dependent DNA helicase 2 subunit KU70 Neighboring gene probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 2 Neighboring gene trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1-like Neighboring gene protein SRG1-like Neighboring gene uncharacterized LOC106294316

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_027752.1 Chromosome C5 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027752.1 Reference BOL Primary Assembly

    Range
    8163394..8167357
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013783805.1 → XP_013639259.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 3

    UniProtKB/TrEMBL
    A0A3P6F412
    Conserved Domains (3) summary
    cd03788
    Location:8 → 451
    GT1_TPS; Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a ...
    PLN03063
    Location:4 → 778
    PLN03063; alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
    cl21460
    Location:491 → 715
    HAD_like; Haloacid Dehalogenase-like Hydrolases
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases