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LOC106344039 putative pectinesterase/pectinesterase inhibitor 22 [ Brassica oleracea (wild cabbage) ]

Gene ID: 106344039, updated on 30-Oct-2024

Summary

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Gene symbol
LOC106344039
Gene description
putative pectinesterase/pectinesterase inhibitor 22
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106344039 in Genome Data Viewer
Location:
chromosome: C5
Exon count:
2
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C5 NC_027752.1 (44967727..44970096)

Chromosome C5 - NC_027752.1Genomic Context describing neighboring genes Neighboring gene replication protein A 70 kDa DNA-binding subunit C-like Neighboring gene uncharacterized LOC106295586 Neighboring gene putative pectinesterase/pectinesterase inhibitor 22 Neighboring gene probable pectinesterase/pectinesterase inhibitor 20

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_027752.1 Chromosome C5 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectinesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pectinesterase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative pectinesterase/pectinesterase inhibitor 22

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027752.1 Reference BOL Primary Assembly

    Range
    44967727..44970096
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013783412.1 → XP_013638866.1  putative pectinesterase/pectinesterase inhibitor 22

    UniProtKB/TrEMBL
    A0A0D3CMI5, A0A3P6FD49
    Conserved Domains (1) summary
    cl27601
    Location:1 → 541
    Pectinesterase; Pectinesterase
Nucleotide Protein
Heading Accession and Version

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