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LOC106341908 F-box protein GID2 [ Brassica oleracea (wild cabbage) ]

Gene ID: 106341908, updated on 30-Oct-2024

Summary

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Gene symbol
LOC106341908
Gene description
F-box protein GID2
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106341908 in Genome Data Viewer
Location:
chromosome: C1
Exon count:
1
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C1 NC_027748.1 (11531289..11532102)

Chromosome C1 - NC_027748.1Genomic Context describing neighboring genes Neighboring gene endoplasmin homolog Neighboring gene probable E3 ubiquitin-protein ligase LOG2 Neighboring gene 3-oxo-Delta(4,5)-steroid 5-beta-reductase Neighboring gene acyl-CoA-binding domain-containing protein 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_027748.1 Chromosome C1 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of gibberellic acid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
F-box protein GID2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027748.1 Reference BOL Primary Assembly

    Range
    11531289..11532102
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013780660.1 → XP_013636114.1  F-box protein GID2

    UniProtKB/TrEMBL
    A0A0D3A5W1, A0A3P6FKH8
    Conserved Domains (1) summary
    pfam00646
    Location:31 → 76
    F-box; F-box domain
Nucleotide Protein
Heading Accession and Version

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