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LOC106341847 putative pectate lyase 14 [ Brassica oleracea (wild cabbage) ]

Gene ID: 106341847, updated on 30-Oct-2024

Summary

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Gene symbol
LOC106341847
Gene description
putative pectate lyase 14
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106341847 in Genome Data Viewer
Location:
chromosome: C4
Exon count:
7
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C4 NC_027751.1 (34180966..34186310, complement)

Chromosome C4 - NC_027751.1Genomic Context describing neighboring genes Neighboring gene cysteine-rich receptor-like protein kinase 10 Neighboring gene probable chlorophyll(ide) b reductase NYC1, chloroplastic Neighboring gene uncharacterized protein At4g13200, chloroplastic Neighboring gene serine/threonine-protein kinase At3g07070

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_027751.1 Chromosome C4 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative pectate lyase 14

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027751.1 Reference BOL Primary Assembly

    Range
    34180966..34186310 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013780574.1 → XP_013636028.1  putative pectate lyase 14

    UniProtKB/TrEMBL
    A0A0D3BZ20, A0A3P6C9B9
    Conserved Domains (1) summary
    smart00656
    Location:160 → 355
    Amb_all; Amb_all domain
Nucleotide Protein
Heading Accession and Version

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