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LOC106341487 pectinesterase 5-like [ Brassica oleracea (wild cabbage) ]

Gene ID: 106341487, updated on 16-Oct-2024

Summary

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Gene symbol
LOC106341487
Gene description
pectinesterase 5-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106341487 in Genome Data Viewer
Location:
chromosome: C4
Exon count:
2
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C4 NC_027751.1 (53431886..53434071, complement)

Chromosome C4 - NC_027751.1Genomic Context describing neighboring genes Neighboring gene auxin-responsive protein IAA20 Neighboring gene ABC transporter B family member 4-like Neighboring gene pectinesterase/pectinesterase inhibitor-like Neighboring gene uncharacterized LOC106339248

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_027751.1 Chromosome C4 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectinesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pectinesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pectinesterase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pectinesterase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pectinesterase 5-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027751.1 Reference BOL Primary Assembly

    Range
    53431886..53434071 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013780247.1 → XP_013635701.1  pectinesterase 5-like

    UniProtKB/TrEMBL
    A0A0D3C6N4, A0A3P6CLR9
    Conserved Domains (3) summary
    PLN02197
    Location:1 → 596
    PLN02197; pectinesterase
    cd15798
    Location:44 → 188
    PMEI-like_3; Uncharacterized subfamily of plant invertase/pectin methylesterase inhibitor domains
    cl01911
    Location:286 → 579
    Pectinesterase; Pectinesterase
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases