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LOC106340642 putative galacturonosyltransferase 2 [ Brassica oleracea (wild cabbage) ]

Gene ID: 106340642, updated on 30-Oct-2024

Summary

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Gene symbol
LOC106340642
Gene description
putative galacturonosyltransferase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106340642 in Genome Data Viewer
Location:
chromosome: C4
Exon count:
5
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C4 NC_027751.1 (980170..983147)

Chromosome C4 - NC_027751.1Genomic Context describing neighboring genes Neighboring gene putative RING-H2 finger protein ATL21B Neighboring gene uncharacterized LOC106337477 Neighboring gene mitochondrial inner membrane protein OXA1-like Neighboring gene uncharacterized LOC106337795

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_027751.1 Chromosome C4 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative galacturonosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027751.1 Reference BOL Primary Assembly

    Range
    980170..983147
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013779486.1 → XP_013634940.1  putative galacturonosyltransferase 2

    UniProtKB/TrEMBL
    A0A0D3BNT1, A0A3P6BN76
    Conserved Domains (2) summary
    cd06429
    Location:276 → 572
    GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
    PLN02910
    Location:5 → 587
    PLN02910; polygalacturonate 4-alpha-galacturonosyltransferase
Nucleotide Protein
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