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LOC106337369 probable galacturonosyltransferase 5 [ Brassica oleracea (wild cabbage) ]

Gene ID: 106337369, updated on 30-Oct-2024

Summary

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Gene symbol
LOC106337369
Gene description
probable galacturonosyltransferase 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106337369 in Genome Data Viewer
Location:
chromosome: C4
Exon count:
9
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C4 NC_027751.1 (45961462..45965142, complement)

Chromosome C4 - NC_027751.1Genomic Context describing neighboring genes Neighboring gene GDSL esterase/lipase At5g45910-like Neighboring gene uridine nucleosidase 1-like Neighboring gene photosystem II reaction center W protein, chloroplastic Neighboring gene E3 ubiquitin protein ligase DRIP2 Neighboring gene probable WRKY transcription factor 21

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_027751.1 Chromosome C4 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027751.1 Reference BOL Primary Assembly

    Range
    45961462..45965142 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013776468.1 → XP_013631922.1  probable galacturonosyltransferase 5 isoform X2

    UniProtKB/TrEMBL
    A0A3P6C713
    Conserved Domains (2) summary
    cd06429
    Location:316 → 591
    GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
    PLN02718
    Location:1 → 605
    PLN02718; Probable galacturonosyltransferase

  2. XM_013776467.1 → XP_013631921.1  probable galacturonosyltransferase 5 isoform X1

    UniProtKB/TrEMBL
    A0A0D3C353, A0A3P6C713
    Conserved Domains (2) summary
    cd06429
    Location:322 → 597
    GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
    PLN02718
    Location:1 → 611
    PLN02718; Probable galacturonosyltransferase
Nucleotide Protein
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