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LOC106337334 laccase-6 [ Brassica oleracea (wild cabbage) ]

Gene ID: 106337334, updated on 30-Oct-2024

Summary

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Gene symbol
LOC106337334
Gene description
laccase-6
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106337334 in Genome Data Viewer
Location:
chromosome: C4
Exon count:
6
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C4 NC_027751.1 (53236841..53239036)

Chromosome C4 - NC_027751.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106339595 Neighboring gene uncharacterized LOC106339244 Neighboring gene uncharacterized LOC106337336 Neighboring gene pyridoxine/pyridoxamine 5'-phosphate oxidase 2 Neighboring gene dof zinc finger protein DOF2.5-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_027751.1 Chromosome C4 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydroquinone:oxygen oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lignin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laccase-6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027751.1 Reference BOL Primary Assembly

    Range
    53236841..53239036
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013776431.1 → XP_013631885.1  laccase-6 isoform X1

    UniProtKB/TrEMBL
    A0A0D3C6K6, A0A3P6CV49
    Conserved Domains (4) summary
    cd13849
    Location:34 → 150
    CuRO_1_LCC_plant; The first cupredoxin domain of plant laccases
    cd13875
    Location:165 → 312
    CuRO_2_LCC_plant; The second cupredoxin domain of the plant laccases
    cd13897
    Location:413 → 552
    CuRO_3_LCC_plant; The third cupredoxin domain of the plant laccases
    TIGR03389
    Location:29 → 569
    laccase; laccase, plant

  2. XM_013776432.1 → XP_013631886.1  laccase-6 isoform X2

    UniProtKB/TrEMBL
    A0A3P6CV49
    Conserved Domains (4) summary
    cd13849
    Location:34 → 150
    CuRO_1_LCC_plant; The first cupredoxin domain of plant laccases
    cd13875
    Location:165 → 300
    CuRO_2_LCC_plant; The second cupredoxin domain of the plant laccases
    cd13897
    Location:401 → 540
    CuRO_3_LCC_plant; The third cupredoxin domain of the plant laccases
    TIGR03389
    Location:29 → 557
    laccase; laccase, plant
Nucleotide Protein
Heading Accession and Version

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