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LOC106336356 probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [ Brassica oleracea (wild cabbage) ]

Gene ID: 106336356, updated on 30-Oct-2024

Summary

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Gene symbol
LOC106336356
Gene description
probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106336356 in Genome Data Viewer
Location:
chromosome: C3
Exon count:
17
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C3 NC_027750.1 (24525534..24530190)

Chromosome C3 - NC_027750.1Genomic Context describing neighboring genes Neighboring gene cyclin-B1-3-like Neighboring gene vacuolar protein sorting-associated protein 55 homolog Neighboring gene casparian strip membrane protein 2-like Neighboring gene protein trichome birefringence-like 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_027750.1 Chromosome C3 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027750.1 Reference BOL Primary Assembly

    Range
    24525534..24530190
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013775167.1 → XP_013630621.1  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY

    UniProtKB/TrEMBL
    A0A0D3BAR5, A0A3P6AHN3
    Conserved Domains (5) summary
    sd00006
    Location:322 → 350
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:322 → 355
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:322 → 387
    TPR_11; TPR repeat
    pfam13424
    Location:100 → 176
    TPR_12; Tetratricopeptide repeat
    cl10013
    Location:478 → 834
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...

  2. XM_013775168.1 → XP_013630622.1  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY

    UniProtKB/TrEMBL
    A0A0D3BAR5, A0A3P6AHN3
    Conserved Domains (5) summary
    sd00006
    Location:322 → 350
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:322 → 355
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:322 → 387
    TPR_11; TPR repeat
    pfam13424
    Location:100 → 176
    TPR_12; Tetratricopeptide repeat
    cl10013
    Location:478 → 834
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...
Nucleotide Protein
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