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LOC106331931 beta-glucosidase BoGH3B-like [ Brassica oleracea (wild cabbage) ]

Gene ID: 106331931, updated on 16-Oct-2024

Summary

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Gene symbol
LOC106331931
Gene description
beta-glucosidase BoGH3B-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106331931 in Genome Data Viewer
Location:
chromosome: C3
Exon count:
8
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C3 NC_027750.1 (48874252..48877075, complement)

Chromosome C3 - NC_027750.1Genomic Context describing neighboring genes Neighboring gene xylulose kinase Neighboring gene beta-glucosidase BoGH3B-like Neighboring gene ATP-dependent zinc metalloprotease FTSH 7, chloroplastic Neighboring gene uncharacterized LOC106335145

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_027750.1 Chromosome C3 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-glucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables beta-glucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucan catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glucan catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-glucosidase BoGH3B-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027750.1 Reference BOL Primary Assembly

    Range
    48874252..48877075 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013770370.1 → XP_013625824.1  beta-glucosidase BoGH3B-like isoform X2

    UniProtKB/TrEMBL
    A0A3P6B7T3
    Conserved Domains (3) summary
    COG1472
    Location:32 → 456
    BglX; Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism]
    pfam01915
    Location:391 → 580
    Glyco_hydro_3_C; Glycosyl hydrolase family 3 C-terminal domain
    cl07971
    Location:35 → 354
    Glyco_hydro_3; Glycosyl hydrolase family 3 N terminal domain

  2. XM_013770369.1 → XP_013625823.1  beta-glucosidase BoGH3B-like isoform X1

    UniProtKB/TrEMBL
    A0A0D3BHQ2, A0A3P6B7T3
    Conserved Domains (1) summary
    PRK15098
    Location:25 → 607
    PRK15098; beta-glucosidase BglX
Nucleotide Protein
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