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LOC106328826 beta-glucosidase BoGH3B-like [ Brassica oleracea (wild cabbage) ]

Gene ID: 106328826, updated on 30-Oct-2024

Summary

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Gene symbol
LOC106328826
Gene description
beta-glucosidase BoGH3B-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106328826 in Genome Data Viewer
Location:
chromosome: C3
Exon count:
11
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C3 NC_027750.1 (5208891..5212060, complement)

Chromosome C3 - NC_027750.1Genomic Context describing neighboring genes Neighboring gene T-complex protein 1 subunit beta Neighboring gene E3 ubiquitin-protein ligase AIP2 Neighboring gene uncharacterized LOC106328828 Neighboring gene 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 3, chloroplastic-like Neighboring gene inactive protein RESTRICTED TEV MOVEMENT 2-like Neighboring gene molybdopterin biosynthesis protein CNX1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_027750.1 Chromosome C3 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-glucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucan catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-glucosidase BoGH3B-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027750.1 Reference BOL Primary Assembly

    Range
    5208891..5212060 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013767351.1 → XP_013622805.1  beta-glucosidase BoGH3B-like isoform X1

    UniProtKB/TrEMBL
    A0A0D3B265, A0A3P6A4U2
    Conserved Domains (3) summary
    COG1472
    Location:73 → 481
    BglX; Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism]
    pfam01915
    Location:438 → 647
    Glyco_hydro_3_C; Glycosyl hydrolase family 3 C-terminal domain
    cl07971
    Location:75 → 401
    Glyco_hydro_3; Glycosyl hydrolase family 3 N terminal domain

  2. XM_013767353.1 → XP_013622807.1  beta-glucosidase BoGH3B-like isoform X2

    UniProtKB/TrEMBL
    A0A3P6A4U2
    Conserved Domains (3) summary
    COG1472
    Location:50 → 458
    BglX; Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism]
    pfam01915
    Location:415 → 624
    Glyco_hydro_3_C; Glycosyl hydrolase family 3 C-terminal domain
    cl07971
    Location:52 → 378
    Glyco_hydro_3; Glycosyl hydrolase family 3 N terminal domain

  3. XM_013767352.1 → XP_013622806.1  beta-glucosidase BoGH3B-like isoform X2

    UniProtKB/TrEMBL
    A0A3P6A4U2
    Conserved Domains (3) summary
    COG1472
    Location:50 → 458
    BglX; Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism]
    pfam01915
    Location:415 → 624
    Glyco_hydro_3_C; Glycosyl hydrolase family 3 C-terminal domain
    cl07971
    Location:52 → 378
    Glyco_hydro_3; Glycosyl hydrolase family 3 N terminal domain
Nucleotide Protein
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