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LOC106327714 xyloglucan 6-xylosyltransferase 2-like [ Brassica oleracea (wild cabbage) ]

Gene ID: 106327714, updated on 30-Oct-2024

Summary

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Gene symbol
LOC106327714
Gene description
xyloglucan 6-xylosyltransferase 2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106327714 in Genome Data Viewer
Location:
chromosome: C2
Exon count:
2
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C2 NC_027749.1 (29156546..29158653, complement)

Chromosome C2 - NC_027749.1Genomic Context describing neighboring genes Neighboring gene NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial-like Neighboring gene homeobox protein LUMINIDEPENDENS Neighboring gene uncharacterized LOC106323947 Neighboring gene translocase of chloroplast 159, chloroplastic-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_027749.1 Chromosome C2 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xyloglucan 6-xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xyloglucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xyloglucan 6-xylosyltransferase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027749.1 Reference BOL Primary Assembly

    Range
    29156546..29158653 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013765949.1 → XP_013621403.1  xyloglucan 6-xylosyltransferase 2-like

    UniProtKB/TrEMBL
    A0A0D3ASF6, A0A3P6DJ69, A0A3P6DVE2
    Conserved Domains (1) summary
    PLN03182
    Location:1 → 452
    PLN03182; xyloglucan 6-xylosyltransferase; Provisional
Nucleotide Protein
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