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LOC106326722 alpha-galactosidase 1 [ Brassica oleracea (wild cabbage) ]

Gene ID: 106326722, updated on 30-Oct-2024

Summary

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Gene symbol
LOC106326722
Gene description
alpha-galactosidase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106326722 in Genome Data Viewer
Location:
chromosome: C2
Exon count:
12
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C2 NC_027749.1 (1783717..1801471, complement)

Chromosome C2 - NC_027749.1Genomic Context describing neighboring genes Neighboring gene E2F-associated phosphoprotein Neighboring gene transcription factor TCP21-like Neighboring gene alpha-galactosidase 2-like Neighboring gene uncharacterized LOC106326725 Neighboring gene lipoyl synthase, chloroplastic-like Neighboring gene KRR1 small subunit processome component homolog Neighboring gene uncharacterized protein At5g08430 Neighboring gene VQ motif-containing protein 31-like Neighboring gene transcription factor DIVARICATA-like Neighboring gene uncharacterized LOC106325567 Neighboring gene topless-related protein 4-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_027749.1 Chromosome C2 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-galactosidase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027749.1 Reference BOL Primary Assembly

    Range
    1783717..1801471 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013764637.1 → XP_013620091.1  alpha-galactosidase 1

    Conserved Domains (1) summary
    cl07893
    Location:1 → 259
    AmyAc_family; Alpha amylase catalytic domain family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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