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LOC106318937 polygalacturonate 4-alpha-galacturonosyltransferase-like [ Brassica oleracea (wild cabbage) ]

Gene ID: 106318937, updated on 30-Oct-2024

Summary

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Gene symbol
LOC106318937
Gene description
polygalacturonate 4-alpha-galacturonosyltransferase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106318937 in Genome Data Viewer
Location:
chromosome: C9
Exon count:
10
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C9 NC_027756.1 (44940336..44943831)

Chromosome C9 - NC_027756.1Genomic Context describing neighboring genes Neighboring gene sucrose synthase 1-like Neighboring gene uncharacterized LOC106317092 Neighboring gene uncharacterized LOC106317641 Neighboring gene 21 kDa protein-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_027756.1 Chromosome C9 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polygalacturonate 4-alpha-galacturonosyltransferase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027756.1 Reference BOL Primary Assembly

    Range
    44940336..44943831
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013757107.1 → XP_013612561.1  polygalacturonate 4-alpha-galacturonosyltransferase-like isoform X1

    UniProtKB/TrEMBL
    A0A3P6C4I3
    Conserved Domains (2) summary
    cd06429
    Location:386 → 679
    GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
    PLN02910
    Location:106 → 694
    PLN02910; polygalacturonate 4-alpha-galacturonosyltransferase

  2. XM_013757108.1 → XP_013612562.1  polygalacturonate 4-alpha-galacturonosyltransferase-like isoform X2

    UniProtKB/TrEMBL
    A0A3P6C4I3
    Conserved Domains (2) summary
    cd06429
    Location:361 → 654
    GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
    PLN02910
    Location:19 → 669
    PLN02910; polygalacturonate 4-alpha-galacturonosyltransferase

  3. XM_013757109.1 → XP_013612563.1  polygalacturonate 4-alpha-galacturonosyltransferase-like isoform X3

    UniProtKB/TrEMBL
    A0A3P6C4I3
    Conserved Domains (2) summary
    cd06429
    Location:360 → 653
    GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
    PLN02910
    Location:19 → 668
    PLN02910; polygalacturonate 4-alpha-galacturonosyltransferase
Nucleotide Protein
Heading Accession and Version

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