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LOC106318492 alpha-L-arabinofuranosidase 2-like [ Brassica oleracea (wild cabbage) ]

Gene ID: 106318492, updated on 16-Oct-2024

Summary

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Gene symbol
LOC106318492
Gene description
alpha-L-arabinofuranosidase 2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106318492 in Genome Data Viewer
Location:
chromosome: C9
Exon count:
17
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C9 NC_027756.1 (53164702..53172990, complement)

Chromosome C9 - NC_027756.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106318495 Neighboring gene F-box/kelch-repeat protein At4g39753-like Neighboring gene uncharacterized LOC106318496 Neighboring gene uncharacterized LOC106318494

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_027756.1 Chromosome C9 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-L-arabinofuranosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables alpha-L-arabinofuranosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-arabinose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in L-arabinose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-L-arabinofuranosidase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027756.1 Reference BOL Primary Assembly

    Range
    53164702..53172990 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013756500.1 → XP_013611954.1  alpha-L-arabinofuranosidase 2-like

    UniProtKB/TrEMBL
    A0A0D3EHS8, A0A3P6EPW3
    Conserved Domains (2) summary
    smart00813
    Location:467 → 650
    Alpha-L-AF_C; Alpha-L-arabinofuranosidase C-terminus
    cl19911
    Location:80 → 229
    CBM_4_9; Carbohydrate binding domain
Nucleotide Protein
Heading Accession and Version

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