U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC106318292 glucan endo-1,3-beta-glucosidase 5 [ Brassica oleracea (wild cabbage) ]

Gene ID: 106318292, updated on 16-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
LOC106318292
Gene description
glucan endo-1,3-beta-glucosidase 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC106318292 in Genome Data Viewer
Location:
chromosome: C1
Exon count:
2
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C1 NC_027748.1 (4118095..4120385, complement)

Chromosome C1 - NC_027748.1Genomic Context describing neighboring genes Neighboring gene aspartate--tRNA ligase 2, cytoplasmic Neighboring gene serine/threonine-protein kinase HT1-like Neighboring gene uncharacterized LOC106343036 Neighboring gene uncharacterized LOC106296757

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_027748.1 Chromosome C1 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
glucan endo-1,3-beta-glucosidase 5

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027748.1 Reference BOL Primary Assembly

    Range
    4118095..4120385 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013756205.1 → XP_013611659.1  glucan endo-1,3-beta-glucosidase 5

    UniProtKB/TrEMBL
    A0A0D3A2Y1, A0A3P6G277
    Conserved Domains (2) summary
    smart00768
    Location:364 → 448
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:27 → 344
    Glyco_hydro_1; Glycosyl hydrolase family 1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases