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LOC106316872 laccase-14 [ Brassica oleracea (wild cabbage) ]

Gene ID: 106316872, updated on 16-Oct-2024

Summary

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Gene symbol
LOC106316872
Gene description
laccase-14
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106316872 in Genome Data Viewer
Location:
chromosome: C9
Exon count:
6
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C9 NC_027756.1 (51386211..51388805)

Chromosome C9 - NC_027756.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106316180 Neighboring gene non-specific lipid-transfer protein-like protein At5g64080 Neighboring gene NAC domain-containing protein 82 Neighboring gene vacuolar protein sorting-associated protein 9A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_027756.1 Chromosome C9 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydroquinone:oxygen oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydroquinone:oxygen oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lignin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lignin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laccase-14

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027756.1 Reference BOL Primary Assembly

    Range
    51386211..51388805
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013754741.1 → XP_013610195.1  laccase-14

    UniProtKB/TrEMBL
    A0A0D3EGR3
    Conserved Domains (4) summary
    cd13849
    Location:37 → 153
    CuRO_1_LCC_plant; The first cupredoxin domain of plant laccases
    cd13875
    Location:168 → 316
    CuRO_2_LCC_plant; The second cupredoxin domain of the plant laccases
    cd13897
    Location:423 → 559
    CuRO_3_LCC_plant; The third cupredoxin domain of the plant laccases
    TIGR03389
    Location:32 → 576
    laccase; laccase, plant
Nucleotide Protein
Heading Accession and Version

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