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LOC106311961 aspartic proteinase A1-like [ Brassica oleracea (wild cabbage) ]

Gene ID: 106311961, updated on 11-Sep-2024

Summary

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Gene symbol
LOC106311961
Gene description
aspartic proteinase A1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106311961 in Genome Data Viewer
Location:
chromosome: C8
Exon count:
14
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C8 NC_027755.1 (20098106..20101890, complement)

Chromosome C8 - NC_027755.1Genomic Context describing neighboring genes Neighboring gene serine--tRNA ligase, chloroplastic/mitochondrial Neighboring gene GPI mannosyltransferase 2-like Neighboring gene 25.3 kDa vesicle transport protein Neighboring gene uncharacterized LOC106311279 Neighboring gene uncharacterized LOC106309981

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_027755.1 Chromosome C8 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by GO

Function Evidence Code Pubs
enables aspartic-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartic proteinase A1-like
Names
aspartic protease

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027755.1 Reference BOL Primary Assembly

    Range
    20098106..20101890 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013749319.1 → XP_013604773.1  aspartic proteinase A1-like

    UniProtKB/TrEMBL
    A0A0D3DP78
    Conserved Domains (5) summary
    cd06098
    Location:73 → 505
    phytepsin; Phytepsin, a plant homolog of mammalian lysosomal pepsins
    smart00741
    Location:314 → 349
    SapB; Saposin (B) Domains
    pfam00026
    Location:82 → 506
    Asp; Eukaryotic aspartyl protease
    pfam03489
    Location:318 → 349
    SapB_2; Saposin-like type B, region 2
    pfam05184
    Location:381 → 415
    SapB_1; Saposin-like type B, region 1
Nucleotide Protein
Heading Accession and Version

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