U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC106307150 probable pectate lyase 18 [ Brassica oleracea (wild cabbage) ]

Gene ID: 106307150, updated on 30-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
LOC106307150
Gene description
probable pectate lyase 18
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC106307150 in Genome Data Viewer
Location:
chromosome: C8
Exon count:
3
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C8 NC_027755.1 (16636080..16637764, complement)

Chromosome C8 - NC_027755.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106311892 Neighboring gene 31 kDa ribonucleoprotein, chloroplastic-like Neighboring gene uncharacterized aarF domain-containing protein kinase 1 Neighboring gene 26S proteasome non-ATPase regulatory subunit 6 homolog

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_027755.1 Chromosome C8 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable pectate lyase 18

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027755.1 Reference BOL Primary Assembly

    Range
    16636080..16637764 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013744022.1 → XP_013599476.1  probable pectate lyase 18

    UniProtKB/TrEMBL
    A0A0D3DMS1, A0A3P6FQW8
    Conserved Domains (1) summary
    smart00656
    Location:132 → 327
    Amb_all; Amb_all domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases