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LOC106306246 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5 [ Brassica oleracea (wild cabbage) ]

Gene ID: 106306246, updated on 30-Oct-2024

Summary

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Gene symbol
LOC106306246
Gene description
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106306246 in Genome Data Viewer
Location:
chromosome: C7
Exon count:
5
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C7 NC_027754.1 (40651815..40655941)

Chromosome C7 - NC_027754.1Genomic Context describing neighboring genes Neighboring gene syntaxin-23 Neighboring gene carboxyl-terminal-processing peptidase 2, chloroplastic Neighboring gene uncharacterized LOC106304360 Neighboring gene putative F-box protein At4g17780 Neighboring gene transcription factor MYB39-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_027754.1 Chromosome C7 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027754.1 Reference BOL Primary Assembly

    Range
    40651815..40655941
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013742792.1 → XP_013598246.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

    UniProtKB/TrEMBL
    A0A0D3DEP3, Q2A970
    Conserved Domains (1) summary
    cl28137
    Location:1 → 847
    Glyco_transf_20; Glycosyltransferase family 20

  2. XM_013742793.1 → XP_013598247.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

    UniProtKB/TrEMBL
    A0A0D3DEP3, Q2A970
    Conserved Domains (1) summary
    cl28137
    Location:1 → 847
    Glyco_transf_20; Glycosyltransferase family 20
Nucleotide Protein
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