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LOC106306092 cellulose synthase A catalytic subunit 4 [UDP-forming] [ Brassica oleracea (wild cabbage) ]

Gene ID: 106306092, updated on 16-Oct-2024

Summary

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Gene symbol
LOC106306092
Gene description
cellulose synthase A catalytic subunit 4 [UDP-forming]
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC106306092 in Genome Data Viewer
Location:
chromosome: C7
Exon count:
11
Annotation release Status Assembly Chr Location
100 current BOL (GCF_000695525.1) C7 NC_027754.1 (25743792..25748068)

Chromosome C7 - NC_027754.1Genomic Context describing neighboring genes Neighboring gene putative auxin response factor 21 Neighboring gene acid phosphatase 1 Neighboring gene MATH and LRR domain-containing protein PFE0570w Neighboring gene uncharacterized LOC106304175 Neighboring gene uncharacterized LOC106304453

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_027754.1 Chromosome C7 Reference BOL Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase A catalytic subunit 4 [UDP-forming]

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BOL Primary Assembly

Genomic

  1. NC_027754.1 Reference BOL Primary Assembly

    Range
    25743792..25748068
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013742561.1 → XP_013598015.1  cellulose synthase A catalytic subunit 4 [UDP-forming]

    UniProtKB/TrEMBL
    A0A0D3D8T1, A0A3P6ERI9
    Conserved Domains (1) summary
    PLN02915
    Location:6 → 1050
    PLN02915; cellulose synthase A [UDP-forming], catalytic subunit
Nucleotide Protein
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